Feature List: Large trees with hundreds of thousands of taxa can be easily displayed, browsed and edited. References D. Huson and C. Scornavacca, Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks , Systematic Biology Huson, D. C Richter, C. Rausch, T. You can get Java from www. Alternatively, the tool TFpredict can be used for superclass prediction. This cutoff is now by default chosen dynamically depending on the PFM similarities predicted for the best matches.
If best matches with very high DNA-motif similarity to the input factor were found, only these factors are used for the PFM transfer. For this purpose, three different cutoff values were predefined and associated to different confidence levels high, medium, and low.
DNA-binding domain prediction: The DNA-binding domains of a transcription factor can now be predicted using an alignment-based approach. As this is still an exploratory feature, it is currently only implemented in the command-line interface of the stand-alone version of SABINE.
A viable alternative method is provided by the tool TFpredict which can also be employed for the prediction of DNA-binding domains. Apart from the above, your personal data will not be used for any other purpose nor divulged to third parties. Name: Organization: E-mail:. Documentation For a detailed description of the program with all of its options, please see the documentation section.
Uni A-Z. Cognitive Systems. About the Chair. Research Projects. Systems Biology Simulation Core Library. Robust Occupancy Mapping.
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